During the “Zero Cool” main story mission, Zinyak will explain how your race is doomed and will force you to pick a door. This is a reference to The Matrix: Reloaded, when Neo meets the architect of The Matrix.
When you first meet The Warden, you will have to defeat him by jumping into him and absorb him. This is a reference to when Neo jumps into Agent Smith and absorbs him in The Matrix.
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